Dr. Amjad Ali
is working as
Professor
in the
Atta-Ur-Rahman School of Applied Biosciences
. Dr. Amjad Ali
has a PhD in
Microbial Genetics And Genomics -Biotechnology
. Dr. Amjad Ali
has published
158
research articles & conference papers having a citation count of
3076
, carried out
9
projects and filed
2
intellectual property.
Analyzing the Tumor Educated Platelets (TEP) as Potential Bio-Marker in Molecular Diagnosis of Liver Cancer: A minimally Invasive Approach alternative to Tissue Biopsy2017
Analysis of Gene Variants and Investigation of Novel Prognostic Host Factor Targets to Predict Treatement Response to Peg IFN/RBV Therapy in HCV Infected Pakistani Patients and Qualitative and Quantitative Modeling of Pathways Associated with HCV Infection and Host Immune Response 2015
Pangenome Analysis of Multidrug Resistant staphylococcus Aures Strains to Get Insights into the Mechannism Of Pathenicity and to identify new Therapeutic Interventions to Replace the Current Antimicrobial Drugs2015
Journal: Current Proteomics, Volume 18, Issue 2, Pages 237-247
Impact Factor: 0.642Citations: 0Quartile: 4
Heterogeneous genomic locations within NS3, NS4A and NS4B identified for genotyping and subtyping of Hepatitis C virus: A simple genome analysis approach2016
Yurong Wu
(Hong Kong University of Science and Technology)
TA
Taane G. Clark
(London School of Hygiene and Tropical Medicine)
AB
Abdul Jabbar
(University of Haripur)
Journal: Scientific Reports, Volume 14, Issue 1, Article Number 10904
Impact Factor: 3.8Citations: 11Quartile: 1
Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: A reverse vaccinology based approach2015
Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets
2015
Muhammad Sohail Afzal
(University of Management and Technology)
NA
Najma Arshad
( University of the Punjab)
Journal: Annals of Agricultural and Environmental Medicine, Volume 2, Issue 4, Pages 661-664
Impact Factor: 0.895Citations: 15Quartile: 4
The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains2013
SI
Siomar C. Soares
(Federal University of Minas Gerais)
Conserved host-pathogen PPIs: Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds2013
DE
Debmalya Barh
(Institute of Integrative Omics and Applied Biotechnology)
KR
Krishnakant Gupta
(Institute of Integrative Omics and Applied Biotechnology)
NE
Neha Jain
(Institute of Integrative Omics and Applied Biotechnology)
NI
Nidia León-Sicairos
(Autonomous University of Sinaloa)
AD
Adrian Canizalez-Roman
(Autonomous University of Sinaloa)
SA
Sandeep Tiwari
(Institute of Integrative Omics and Applied Biotechnology)
SY
Syed Shah Hassan
(Federal University of Minas Gerais)
Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production2013
SI
Siomar C. Soares
(University of Bielefeld)
EV
Eva Trost
(University of Bielefeld)
RO
Rommel Thiago J. Ramos
(Federal University of Para)
AD
Adriana R. Carneiro
(Federal University of Para)
AN
Anderson R. Santos
(Federal University of Minas Gerais)
AN
Anne C. Pinto
(Federal University of Minas Gerais)
EU
Eudes Barbosa
(Federal University of Minas Gerais)
FL
Flavia Aburjail
(Federal University of Minas Gerais)
Syeda Marriam Bakhtiar
(ade Federal do Pará, Belém, Pará, Brazil)
VA
Vasco Azevedo
(Federal University of Para)
Journal: Journal of Bacteriology, Volume 194, Issue 13, Pages 3567-3568
Impact Factor: 3.177Citations: 18Quartile: 2
Reannotation of the Corynebacterium diphtheriae NCTC13129 genome as a new approach to studying gene targets connected to virulence and pathogenicity in diphtheria2012
VI
Vivian D'Afonseca
(Federal University of Minas Gerais)
SI
Siomar C. Soares
(Federal University of Minas Gerais)
Syed Shah Hassan
(Federal University of Minas Gerais)
AR
Artur Silva
(Federal University of Para)
Journal: Journal of Bacteriology, Volume 194, Issue 23, Pages 6689-6690
Impact Factor: 3.177Citations: 49Quartile: 2
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology2012
SY
Syed Shah Hassan
(Laboratório de Genética Celular e Molecular, Departamento de Biologia Geral, Instituto de Ciências Biológicas (ICB), Universidade Federal de Minas Gerais, Belo Horizonte, Brazil)
LU
Luís Carlos Guimarães
(Federal University of Minas Gerais)
UL
Ulisses de Pádua Pereira
(Federal University of Lavras)
In silico analysis of SIGMAR1 variant (rs4879809) segregating in a consanguineous Pakistani family showing amyotrophic lateral sclerosis without frontotemporal lobar dementia2015
MU
Muhammad Ikram Ullah
(Quaid-I-Azam University Islamabad, Pakistan)
AR
Arsalan Ahmad
(Shifa International Hospital, Shifa Tameer e Millat University, Islamabad Pakistan)
SY
Syed Irfan Raza
(Quaid-I-Azam University Islamabad, Pakistan)
Anne C. Pinto
(Federal University of Minas Gerais)
VA
Vasco Azevedo
(Federal University of Minas Gerais)
AN
Anne C. Pinto
(Federal University of Minas Gerais)
AN
Anderson R. Santos
(Federal University of Minas Gerais)
AR
Aryanne A. M. C. Rocha
(Federal University of Minas Gerais)
DÉ
Débora O. Lopes
(Federal University of Minas Gerais)
FE
Fernanda A. Dorella
(Federal University of Minas Gerais)
LU
Luis G. C. Pacheco
(Federal University of Minas Gerais)
MA
Marcília P. Costa
(State University of Ceara)
ME
Meritxell Z. Turk
(Federal University of Minas Gerais)
NÚ
Núbia Seyffert
(Federal University of Minas Gerais)
PA
Pablo M. R. O. Moraes
(Federal University of Minas Gerais)
SI
Siomar C. Soares
(Federal University of Minas Gerais)
SI
Sintia S. Almeida
(Federal University of Minas Gerais)
TH
Thiago L. P. Castro
(Federal University of Minas Gerais)
VI
Vinicius A. C. Abreu
(Federal University of Minas Gerais)
EV
Eva Trost
(University of Bielefeld)
JA
Jan Baumbach
(Max Planck Institute for Informatics)
AN
Andreas Tauch
(University of Bielefeld)
VA
Vasco Azevedo
(Federal University of Minas Gerais)
Journal: PLoS ONE, Volume 6, Issue 4, Article Number e18551
Impact Factor: 4.092Citations: 75Quartile: 1
Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in scotland and Australia, respectively2012
FL
Florence E. Pethick
(Moredun Research Institute)
A
Alex F. Lainson
(Moredun Research Institute)
RA
Raja Yaga
(Moredun Research Institute)
LO
Louise Teixeira Cerdeira
(Federal University of Para)
AR
Artur Silva
(Federal University of Para)
MA
Maria Silvanira Barbosa
(Federal University of Para)
AN
Anne C. Pinto
(Federal University of Minas Gerais)
Anderson Rodrigues Santos
(Federal University of Minas Gerais)
AM
Amarendra Narayan Misra
(Fakir Mohan University)
VA
Vasco Azevedo
(Federal University of Minas Gerais)
AN
Anil Kumar
(Devi Ahilya University)
Journal: Drug Development Research, Volume 72, Issue 2, Pages 162-177
Impact Factor: 1.193Citations: 142Quartile: 4
A novel comparative genomics analysis for common drug and vaccine targets in Corynebacterium pseudotuberculosis and other CMN group of human pathogens2011
DE
Debmalya Barh
(Institute of Integrative Omics and Applied Biotechnology)
NE
Neha Jain
(Institute of Integrative Omics and Applied Biotechnology)
SA
Sandeep Tiwari
(Institute of Integrative Omics and Applied Biotechnology)
BI
Bibhu Prasad Parida
(Institute of Integrative Omics and Applied Biotechnology)
VI
Vivian D'Afonseca
(Federal University of Minas Gerais)
Ilyas Ahmad
(National Institute for Biotechnology and Genetic Engineering)
MA
Martina J Sinnegger-Brauns
(University of Innsbruck)
NI
Niels Brandt
(University of Tübingen)
JU
Jutta Engel
(University of Tübingen)
MA
Matteo E Mangoni
(University of Montpellier)
MU
Muhammad Farooq
(Health Biotechnology Division, Human Molecular Genetics Laboratory, National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan)
Preaxial polydactyly/triphalangeal thumb is associated with changed transcription factor-binding affinity in a family with a novel point mutation in the long-range cis-regulatory element ZRS2010
MU
Muhammad Farooq
(National Institute for Biotechnology and Genetic Engineering)
JE
Jesper T Troelsen
(University of Copenhagen)
ME
Mette Boyd
(University of Copenhagen)
HA
Hans Eiberg
(University of Copenhagen)
LA
Lars Hansen
(University of Copenhagen)
MU
Muhammad Sajid Hussain
(National Institute for Biotechnology and Genetic Engineering)
SH
Shoib ur Rehman
(National Institute for Biotechnology and Genetic Engineering)
AY
Ayesha Azhar
(National Institute for Biotechnology and Genetic Engineering)
Journal: Database : The Journal of Biological Databases and Curation, Volume:2024, Article Number: baae096, Pages: 15
Impact Factor: 3.4Citations: 2Quartile: 1
Whole-genome sequencing of a new sequence type (ST5352) strain of community-acquired methicillin-resistant Staphylococcus aureus from a hospital in Pakistan2019
Journal: IET Systems Biology, Volume 13, Issue 2, Pages 69-76
Impact Factor: 1.392Citations: 2Quartile: 4
Immunoinformatics aided designing of a next generation poly-epitope vaccine against uropathogenic Escherichia coli to combat urinary tract infections2023
Emna Ben Abdallah
(Centre national de la recherche scientifique)
OL
Olivier Roux
(Centre national de la recherche scientifique)
Journal: Frontiers in Physiology, Volume: 8, Article Number 416
Impact Factor: 3.394Citations: 5Quartile: 1
Identification of drug resistance and immune-driven variations in hepatitis C virus (HCV) NS3/4A, NS5A and NS5B regions reveals a new approach toward personalized medicine2017
Journal: Genomics, Vol.09 (5-6), Pages 408-418, Oct 2017
Impact Factor: 2.91Citations: 29Quartile: 2
VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology2017
Journal: BMC Genomics, Volume 24, Issue 1, Article Number 546
Impact Factor: 4.4Citations: 5Quartile: 1
Virulence Factors and Antimicrobial Resistance of Uropathogenic Escherichia coli EQ101 UPEC Isolated from UTI Patient in Quetta, Balochistan, Pakistan2023
An integrated structural proteomics approach along the druggable genome of Corynebacterium pseudotuberculosis species for putative druggable targets2015
LE
Leandro G Radusky
(Universidad de Buenos Aires)
SY
Syed Shah Hassan
(Federal University of Minas Gerais)
ES
Esteban Lanzarotti
(Universidad de Buenos Aires)
SA
Sandeep Tiwari
(Federal University of Minas Gerais)
SY
Syed Babar Jamal
(Federal University of Minas Gerais)
JA
Javed Ali
(Kohat University of Science and Technology)
Journal: Journal of Global Antimicrobial Resistance, Volume 29, Pages 131-135
Impact Factor: 4.349Citations: 6Quartile: 2
Comparative Genomic Analysis of a Panton–Valentine Leukocidin-Positive ST22 Community-Acquired Methicillin-Resistant Staphylococcus aureus from Pakistan2022
NI
Nimat Ullah
SA
Samavi Nasir
ZA
Zaara Ishaq
FA
Farha Anwer
TA
Tanzeela Raza
MO
Moazur Rahman
(University of the Punjab)
AB
Abdulrahman Alshammari
(King Saud University)
ME
Metab Alharbi
(King Saud University)
TA
Taeok Bae
(Indiana University School of Medicine-Northwest)
Antimicrobial Resistance of Shigella fexneri in Pakistani Pediatric Population Reveals an Increased Trend of Third‑Generation Cephalosporin Resistance2022
IQ
Iqbal Nisa
(Kohat University of Science and Technology)
MO
Mohammad Haroon
(Khyber Teaching Hospital)
A
Arnold Driessen
(University of Groningen)
JE
Jeroen Nijland
(University of Groningen)
HA
Hazir Rahman
(Abdul Wali Khan University)
NU
Nusrat Yasin
(Kohat University of Science and Technology)
MU
Mubashir Hussain
(Kohat University of Science and Technology)
TA
Taj Ali Khan
(Kohat University of Science and Technology)
Journal: PLoS ONE, Volume 10(9), Article Number e0138913
Impact Factor: 3.057Citations: 40Quartile: 1
In silico designed Staphylococcus aureus B-cell multi-epitope vaccine did not elicit antibodies against target antigens suggesting multi-domain approach2022
NI
Nimat Ullah
FA
Farha Anwer
ZA
Zaara Ishaq
AB
Abubakar Siddique
MA
Majid Ali Shah
(Indiana University School of Medicine-Northwest)
Journal: Vaccine, Volume 42, Issue 22 , Article Number 126204
Impact Factor: 4.500Citations: 4Quartile: 2
Lactobacillus reuteri and Enterococcus faecium from Poultry Gut Reduce Mucin Adhesion and Biofilm Formation of Cephalosporin and Fluoroquinolone-Resistant Salmonella enterica2021
Journal: Antibiotics-Basel, Volume 10(9), Article Number 1121
Impact Factor: 4.639Citations: 9Quartile: 2
Lacticaseibacillus rhamnosus FM9 and Limosilactobacillus fermentum Y57 Are as Effective as Statins at Improving Blood Lipid Profile in High Cholesterol, High-Fat Diet Model in Male Wistar Rats2022
Antimicrobial Resistance Profiling of Biofilm Forming Non Typhoidal Salmonella enterica Isolates from Poultry and Its Associated Food Products from Pakistan2021
Journal: Antibiotics, Volume 10(7), Article Number 785
Impact Factor: 4.639Citations: 24Quartile: 2
Antimicrobial Resistance and Genomic Characterization of Six New Sequence Types in Multidrug-Resistant Pseudomonas aeruginosa Clinical Isolates from Pakistan2021
Journal: Antibiotics-Basel, Volume 10, Issue 11, Article Number 1386
Impact Factor: 5.222Citations: 9Quartile: 1
Evaluation of Blood-Brain-Barrier Permeability, Neurotoxicity, and Potential Cognitive Impairment by Pseudomonas aeruginosa’s Virulence Factor Pyocyanin2022
Journal: Computational Biology and Chemistry, Volume 51, Pages 71-82
Impact Factor: 1.117Citations: 10Quartile: 3
Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression2016
Journal: Asian Pacific Journal of Tropical Medicine, Volume 9, Issue 9, Pages 844-850
Impact Factor: 0.925Citations: 44Quartile: 3
In-silico analysis of claudin-5 reveals novel putative sites for post-translational modifications: Insights into potential molecular determinants of blood-brain barrier breach during HIV-1 infiltration2014
Journal: Infection, Genetics and Evolution, Volume 27, Pages 355-365
Impact Factor: 3.015Citations: 16Quartile: 2
Formal Modelling of Toll like Receptor 4 and JAK/STAT Signalling Pathways: Insight into the Roles of SOCS-1, Interferon-β and Proinflammatory Cytokines in Sepsis2014
Kashif Asghar
( Shaukat Khanum Memorial Cancer Hospital and Research Centre (SKMCH & RC))
Journal: Gene, Volume: 597 Pages: 66-75
Impact Factor: 2.498Citations: 18Quartile: 3
MicroRNA pharmacogenomics based integrated model of miR-17-92 cluster in sorafenib resistant HCC cells reveals a strategy to forestall drug resistance2017
Syeda Marriam Bakhtiar
(Mohammad Ali Jinnah University)
V
Vasco Azevedo
( ICB/UFMG)
Journal: Molecular and Genetic Medicine, Vol.9:154, Pages 03
Impact Factor: 0Citations: 0Quartile: N/A
In silico drug repurposing via chemical-protein interaction analysis, a proof-of-concept study: targeting pyocyanin based virulence of antibiotic resistant Pseudomonas aeruginosa2018
Structural and functional annotation of PR/SET Domain (PRDM) protein family: In-silico study elaborating role of PRDM12 mutation in congenital insensitivity to pain2020
Conference: 1st International Conference on Water, Energy and Environment for Sustainability (IC-WEES) Biotechnologies for Environment, Health and Agriculture
Citations: N/A
Invited as a keynote speaker to give a talk on Microbial Bioinformatics and Reverse Vaccinology Approaches to deal with Big Data: Genomics Data.
Conference: 6th International Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2018
Citations: N/A
Formal Modeling of the Key Determinants of Hepatitis C Virus (HCV) Induced Adaptive Immune Response Network: An Integrative Approach to Map the Cellular and Cytokine-Mediated Host Immune Regulations
Conference: International Conference on Computational Science and Its Applications, ICCSA 2018
Citations: 1
Modelling of Adaptive and Innate Immune Responses and Identification of Crosstalk Amongst Various Signaling Pathways Involved in HCV Infection using System Biology Approach
Book: Microbiology in the Era of Artificial Intelligence: Nanotechnology, Quantum, and Next Generation Sequencing (Chapter 15, Pages 271-290) Citations: N/A
Pan-genomics of model bacteria and their outcomes2020
